Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVALIPEKCIACGLCQTYSN--IFDYQDDGIVKFSDTDNLEKEVPNSDQDTV------LAVKSCPTKALTIL
1RGV Chain:A ((2-60))
---LYINDDCTACDACVEECPNEAITPGD-PIYVI-D--------PTKCSECVGAFDEPQCRLVCPADCIPDN
General information:
TITO was launched using:
RESULT:
Template:
1RGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34239 for 312 contacts (-109.7/contact) +
2D Compatibility (PS) -5336 + (NN) -2839 + (LL) 896
1D Compatibility (HY) -1600 + (ID) 600
Total energy: -43718.0 ( -140.12 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_1RGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RGV-query.scw
PDB file :
Tito_Scwrl_1RGV.pdb
: