Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
3CJT Chain:J ((2-138))
--KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGDAIVPVEITIYADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGR-------EIAKQKMP------LEAAARMIAGSARSMGVEVVG
General information:
TITO was launched using:
RESULT:
Template:
3CJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62722 for 804 contacts (-78.0/contact) +
2D Compatibility (PS) -13891 + (NN) -8664 + (LL) 1500
1D Compatibility (HY) -11600 + (ID) 4000
Total energy: -99377.0 ( -123.60 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3CJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJT-query.scw
PDB file :
Tito_Scwrl_3CJT.pdb
: