Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALEVTDATFVEETK-EGLVLIDFWATWCGPCRMQAPILEQLSQEIDEDELKILKMDVDENPETARQFGIMSIPTLMFKKDGEVVKQVAGVHTKDQLKAIIAELS
1NW2 Chain:E ((3-103))
--MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA-EAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLADVL
General information:
TITO was launched using:
RESULT:
Template:
1NW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48549 for 720 contacts (-67.4/contact) +
2D Compatibility (PS) -10307 + (NN) 1562 + (LL) 472
1D Compatibility (HY) -10400 + (ID) 2650
Total energy: -69872.0 ( -97.04 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_1NW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NW2-query.scw
PDB file :
Tito_Scwrl_1NW2.pdb
: