Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRLPNLQVALDHSDLQGAIKAAVSVGHEVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICCATIPTMEAALKAIKEERGDRGEIQIELYGDWTYEQAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLIDMGFRVSVTGGLSTDTLQLFEGVDVFTFIAGRGITEADDPAAAARAFKDEIKRIWG
1XBV Chain:B ((3-216))
----LPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGD---VQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG
General information:
TITO was launched using:
RESULT:
Template:
1XBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152214 for 1835 contacts (-83.0/contact) +
2D Compatibility (PS) -23368 + (NN) -9971 + (LL) 456
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -209697.0 ( -114.28 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1XBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XBV-query.scw
PDB file :
Tito_Scwrl_1XBV.pdb
: