Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIIIVAHGN-FPDGILSSLELIAGHQEYVVGINFIAGMSSNDVRVALQREVID-----FKEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTCLATQTAEATFEGGI
3GDW Chain:A ((4-129))
NVGVFVLMHGDSTASSMLKTAQELLGTS-IGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDM--GSLNSFGNMLFEE-TGIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQNIQLSFESVVREQFRS--------------
General information:
TITO was launched using:
RESULT:
Template:
3GDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110323 for 940 contacts (-117.4/contact) +
2D Compatibility (PS) -13041 + (NN) -4964 + (LL) 1464
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -134414.0 ( -142.99 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_3GDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GDW-query.scw
PDB file :
Tito_Scwrl_3GDW.pdb
: