Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTLGTSFISSLKAPLPQVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEFNKLAALGEFDKITEMAKQYKIQLNLN
1WA3 Chain:C ((9-196))
-----------KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKEL--SFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK----GTPDEVREKAKAFVEKIRGC
General information:
TITO was launched using:
RESULT:
Template:
1WA3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159534 for 1620 contacts (-98.5/contact) +
2D Compatibility (PS) -20523 + (NN) -7877 + (LL) 2456
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -205378.0 ( -126.78 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1WA3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WA3-query.scw
PDB file :
Tito_Scwrl_1WA3.pdb
: