Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKEYENNPYHLAQLVDLINYCQNIEAKLDIKMAEQDDIFQIENYYQNRKGQFWIALENEKVVGSIALLRI----DDKTAVLKKFFTYPKYRGNPVRLGRKLFERFMLFARASKFTRIVLDTPEKEKRSHFFYENQGFKQITRDELDVDYIFPDRDSRIYVKLLD
3LD2 Chain:A ((34-191))
-SMKISPMLLSDIEQVVELENKTWSEQNTPVPLPV--ASKDQIIQKFE-SNTHFLVAKIKDKIVGVLDYSSLYPFPSGQHIVTFGIAVAEKERRK--GIGRALVQIFLNEVKS-DYQKVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYSYDLE
General information:
TITO was launched using:
RESULT:
Template:
3LD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42944 for 1110 contacts (-38.7/contact) +
2D Compatibility (PS) -15945 + (NN) -3576 + (LL) 376
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -67089.0 ( -60.44 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_3LD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD2-query.scw
PDB file :
Tito_Scwrl_3LD2.pdb
: