Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MP-SEKEILDALSKVYSEEVIQADDYFRQAIFELASQLEK---EGMNSLLATKIDSLINQYVLTHQFDAPKSIFDLSRLVKTKASH--YKGTAISAIMLGSFLSGGPK---
1TDP Chain:A ((1-111))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43300 for 774 contacts (-55.9/contact) +
2D Compatibility (PS) -11149 + (NN) -7692 + (LL) 0
1D Compatibility (HY) -7200 + (ID) 800
Total energy: -70141.0 ( -90.62 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: