Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDVVLDFAKALVNAKRNLTYCSVCGHITDQDPCYICEDTRRDKSVICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLLKPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL
4O6O Chain:D ((17-212))
--YSTSVAKLIEELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQAIIEAKEKLRYGKICFNITDKEVCDICSDENRDHSTICVVSHPMDVVAMEKVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRDGSVKEVILATNPDIEGEATAMYIAKLLKPFGVKVTRIAHGIPVGGDLEYTDVVTLSKALEGRREV
General information:
TITO was launched using:
RESULT:
Template:
4O6O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124640 for 1262 contacts (-98.8/contact) +
2D Compatibility (PS) -21481 + (NN) -16755 + (LL) 328
1D Compatibility (HY) -23600 + (ID) 6250
Total energy: -192398.0 ( -152.45 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4O6O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O6O-query.scw
PDB file :
Tito_Scwrl_4O6O.pdb
: