Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
4DWJ Chain:F ((28-228))
----FITFEGPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN-SRDQNRLDQEDLKFHEKVIEGYQEIIH--SQRFKSVNADQPLENVVEDTYQTIIKYLEK---
General information:
TITO was launched using:
RESULT:
Template:
4DWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84461 for 1580 contacts (-53.5/contact) +
2D Compatibility (PS) -22236 + (NN) -13536 + (LL) 952
1D Compatibility (HY) -20800 + (ID) 5500
Total energy: -145581.0 ( -92.14 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_4DWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DWJ-query.scw
PDB file :
Tito_Scwrl_4DWJ.pdb
: