Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVT-ILKEEGAEA-VGGIMHCFTGSAEVARECMK-MNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
2GZX Chain:A ((2-254))
-LIDTHVHLNDEQYDDDLSEVITRAREAGVDRMFVVGFNKSTIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHLEWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREATQDCIDILLEEHA--EEVGGIMHSFSGSPEIADIVTNKLNFYISLGGPVTFKNAKQPKEVAKHVSMERLLVETDAPYLSPHPYRGKRNEPARVTLVAEQIAELKGLSYEEVCEQTTKNAEKLFN--
General information:
TITO was launched using:
RESULT:
Template:
2GZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168588 for 2205 contacts (-76.5/contact) +
2D Compatibility (PS) -27434 + (NN) -15744 + (LL) 580
1D Compatibility (HY) -30400 + (ID) 8050
Total energy: -249636.0 ( -113.21 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_2GZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZX-query.scw
PDB file :
Tito_Scwrl_2GZX.pdb
: