Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGKITVVGLGAGDMDQLTIGIHKLLTKADTLYVRTKDHPLIEELEKETKNIRFFDDIYEKHDQFEAVYEEIADILFEAA-RREDVVYAVPGHPFVAEKTVQLLTERQEKENVQVKVAGGQSFLDATFNVLQIDPIEG-----FQFVDAGTLSA-----DELELRHHLIICQVYDQMTASEVKLTLME-KLPDDYEVVIVTAAGSRGEEIRTVPLFELDRN---VALNNLTSVYIPPIKEEKLLYHEFSTFRSIIRELRGPNGCPWDKKQTHQSLKQYMIEECYELLEAIDEEDTDHMIEELGDVLLQVLLHAQIGEDEGYFTIDDVIKGISEKMVRRHPHVFKDVKVQDENDVLANWEDIKKAEKNTSESSLLDSVPKTLPALSKAAKLQKKAAKVGFDWEDVSDIWEKVSEEMKEFSSEVSEAPHEHNLKAEFGDILFALVNVARFYKIEPEEALTMTNDKFRRRFSYIEETAKEEGVELADMSLEDMDKLWNEAKETERRS |
| 1S4D Chain:A ((13-250)) | EKGSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAV---LEFAGKRG--PSPKQRDISLRLVELARAGNRVLRLKGGDPFVFG-RGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHD---RINWQGIASGSPVIVMYMAMKH--IGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134201 for 1755 contacts (-76.5/contact) +
2D Compatibility (PS) -22733 + (NN) -8496 + (LL) 21276
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -150204.0 ( -85.59 by residue)
QMean score : 0.509
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