Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEK-DGKIGLSIKKAKDRPQARP--------------RNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
2K4K Chain:A ((5-124))
--FEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAAPEKKESKPRKPKAAQVSEEASTPQGFNTLKDKLEEWIEMSNR---------------------
General information:
TITO was launched using:
RESULT:
Template:
2K4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35212 for 657 contacts (-53.6/contact) +
2D Compatibility (PS) -11033 + (NN) -1100 + (LL) 708
1D Compatibility (HY) -11600 + (ID) 2250
Total energy: -60487.0 ( -92.07 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_2K4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4K-query.scw
PDB file :
Tito_Scwrl_2K4K.pdb
: