Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDYLVKALAYDGKVRAYAARTTDMVNEGQRRHGTWPTASAALGRTMTASLMLGAMLKGDDKLTVKIEGGGPIGAIVADANAKGEVRAYVSNPQVHFDLNEQGKLDVRRAVGTNGTLSVVKDLGLREFFTGQVEIVSGELGDDFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGGFIIQLMPGT-DDETITKIEQRLSQVEPISKLIQKGLTPEEILEEVL-GEKPEILETMPVRFHCPCSKERFETAILGLGKKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQTTR |
1VQ0 Chain:A ((14-297)) | ---IYYGTMFDHKVRFSIVRMREVVEEARNRHALSYLATVVLGRALIGAALVTPWLAEKERWTLDIEGNGPIRRVVAQSTSEFTVRGYVANPKVELPLNEKGKFDVAGAIGQ-GVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIPSAFSIGVLVDS-DGVKIAGGFAVQIIDRTLEQEKVEMIEKNIKNLPSISKLFQ-EAEPLDVLERIFGE-KVGFVETAEIKYKCDCNREKAKNALLVLDKKELEDMR-KEGKGEVVCKWCNTRYVFSEEELEELLKFKV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VQ0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165380 for 2343 contacts (-70.6/contact) +
2D Compatibility (PS) -30345 + (NN) -5278 + (LL) 440
1D Compatibility (HY) -28400 + (ID) 5500
Total energy: -234463.0 ( -100.07 by residue)
QMean score : 0.595
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