Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHNISDIIEQYLKRVLDQNGKEILEIKRSEIADKFQCVPSQINYVINTRFTSERGYIVESKRGGGGYIRIIKIKMNNEVVLINNIISQINTHLSQAASDDIILRLLEDKVISEREAKMMVSVMDRSVLHIDLPERDELRARMMKAMLTSLKLK
1R8D Chain:A ((3-72))
--------------------------YQVKQVAEISGVSIRTLHHYDNI------ELLNPSALTDAGYRLYSDADLER----LQQILFFKEIGFRLDEIKEMLDHP------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1R8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30404 for 452 contacts (-67.3/contact) +
2D Compatibility (PS) -7303 + (NN) 2247 + (LL) 8068
1D Compatibility (HY) -2000 + (ID) 300
Total energy: -29692.0 ( -65.69 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1R8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R8D-query.scw
PDB file :
Tito_Scwrl_1R8D.pdb
: