Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVGK-IGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4REO Chain:A ((9-229))
--------RALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4REO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125713 for 1780 contacts (-70.6/contact) +
2D Compatibility (PS) -24053 + (NN) -14993 + (LL) 836
1D Compatibility (HY) -17200 + (ID) 5850
Total energy: -186973.0 ( -105.04 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4REO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4REO-query.scw
PDB file :
Tito_Scwrl_4REO.pdb
: