Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIMKLGP-RRGDGAPMAIIELV-
1GD8 Chain:A ((14-118))
---------SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQD--------VKLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE
General information:
TITO was launched using:
RESULT:
Template:
1GD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45171 for 712 contacts (-63.4/contact) +
2D Compatibility (PS) -11753 + (NN) -8027 + (LL) 1000
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -76201.0 ( -107.02 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_1GD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD8-query.scw
PDB file :
Tito_Scwrl_1GD8.pdb
: