Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------------------------------------------------------------------------------MPLLTPTSVVLGVLLSQFLNGYEWAVPWIFAFITFAGSLSANFQS--------LRHALSHPLPMILALFVLHIFMPLFAWGSGHLIFKGDPLTITGLTLAVVIPTGIT--------SLIWAAMYKGNVGLTLSI-ILVDTVLSPLIVPL---------SLSLLAGAQVHMDVWGMMKGLIVMVVIPSFLGMLFNQMSSPERTAFVSSALSPFSKLCLMAVIAINSSAIAPYFKSIDLRFAGIAVTVFFIALTGYAAAWLIGKMMKRRQEEIVSLIFTGG--------MRNISAGA-----VLAVTFFPSQVAVPVVIGMLFQQ-ILAALFGYMLNRFELKPMLQKA--
1PMM Chain:A ((3-452))KKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP


General information:
TITO was launched using:
RESULT:

Template: 1PMM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -312111 for 2380 contacts (-131.1/contact) +
2D Compatibility (PS) -32142 + (NN) -514 + (LL) 0
1D Compatibility (HY) 2400 + (ID) 1550
Total energy: -343917.0 ( -144.50 by residue)
QMean score : 0.154

(partial model without unconserved sides chains):
PDB file : Tito_1PMM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PMM-query.scw
PDB file : Tito_Scwrl_1PMM.pdb: