Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFEDIPFLQYLGNAVDILLVWYVIYKLIMVIRGTKAVQLLKGIVVIVLVRMASQYLGLSTLQWLMDQAITWGFLAIIIIFQPELRRALEQLGRGRFFSRSGTPVEEAQQKTIEAITKAINYMAKRRIGALLTIERDTGMGDYIETGIPLNAKVSSELLINIFIPNTPLHDGAVIMKNNEIAAAACYLPLSESPFISKELGTRHRAAVGISEVTDSLTIIVSEETGGVSVAKNGDLHRELTEEALKEMLEAEFKKNTRDTSSNRWYWRGKKNG
4RV7 Chain:A ((18-176))
------------------------------------------------------------------------------------------------SSYGS--RIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLINIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSITIVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVT----------------
General information:
TITO was launched using:
RESULT:
Template:
4RV7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119803 for 1268 contacts (-94.5/contact) +
2D Compatibility (PS) -17212 + (NN) -6705 + (LL) 10576
1D Compatibility (HY) -17200 + (ID) 5400
Total energy: -155744.0 ( -122.83 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_4RV7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RV7-query.scw
PDB file :
Tito_Scwrl_4RV7.pdb
: