Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MKKSKGSIESEISKSITQWEKDYLGRGSVSVKTDILRDMIIVNL-----KGILTPAE--YVVCGSKEGMLSIKQTRS--------ELVESGIEGLKDIILKIT---------GEKVKSFHTDLSSRTGERVMVFKLCNDLEKNLEKIL-
1DVO Chain:A ((33-184))
PPKWKVKKQKLAEKAAREAELTAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPRLLACGIRDVLLEDVAQRNIPLSHKKLRRAMKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEVYAAERLDKIRRQNRIKAELQAVLD
General information:
TITO was launched using:
RESULT:
Template:
1DVO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21304 for 639 contacts (-33.3/contact) +
2D Compatibility (PS) -12535 + (NN) 1992 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -34397.0 ( -53.83 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1DVO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVO-query.scw
PDB file :
Tito_Scwrl_1DVO.pdb
: