Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLMQVQNLSKCYRNGDGV--EHLSFSIQRGEIVALLGPNGAGKTTTIRCLTGLYKPDKGDILIEGS----------PPGDINVQKKVALIPDQPYLYPALTAAEHIQFRARGYHPGKKDVKERVYHALKEVHLEEKANQLCGQLSRGQKQRVVLAGAIVQDALLYILDEPTVGLDIPSKQWLSNWLK-TKTDQGCSAFVSTHSLEFVIETADRVILIRDGKLMQ-----DLY-VPQFEEQAEWRKEVIRLLGEWSDE
1OXV Chain:D ((1-254))
MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED----RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIGEINELEGKVTNE
General information:
TITO was launched using:
RESULT:
Template:
1OXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103427 for 1786 contacts (-57.9/contact) +
2D Compatibility (PS) -25515 + (NN) -11086 + (LL) 436
1D Compatibility (HY) -16800 + (ID) 4000
Total energy: -160392.0 ( -89.81 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1OXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXV-query.scw
PDB file :
Tito_Scwrl_1OXV.pdb
: