Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMETFKSILHEAQRIVVLTGAGMSTESGIPDFRSAGGIWTEDASRMEAMSLDYFLSYPRLFWPKFKELFQMKMSGSF--EPNEGHLLLAELEKQGKQVDIFTQNIDGLHKKAGSRHVYELHGSIQTAACPACGARYDLPHLLER----EVPECTAAGNNGDICGTVLKTDVVLFGDAVMHFDTLYEKLDQA---DLLLVIGTSLEVAPARFVPEDASLIPGMKKVIINLEPTYCDSLFDMVIHQKIGEFARSLGMKK
1YC2 Chain:B ((11-237))------ILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPE-EVASISGFKRNPRAFWE-----FSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGS------YYVKPRVVLFGEPLPQ-RTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKA-GAKMIIVNAEPTMADPIFDVKIIGKAGE---------


General information:
TITO was launched using:
RESULT:

Template: 1YC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1141 -98055 -85.94 -449.79
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.78

3D Compatibility (PKB) : -85.94
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.363

(partial model without unconserved sides chains):
PDB file : Tito_1YC2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YC2-query.scw
PDB file : Tito_Scwrl_1YC2.pdb: