Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKKTWKRFLHFSSAALAAGLIFTSAAPAEAAFWGASNELLHDPTMIKEGSSWYALGTGLTEERGLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWAPDIQYYNGKYWLYYSVSSFGSNTSAIGLASSTSISSGG----WKDEGLVIRSTSSNN-YNAIDPELTFDKDGNPWLAFGSFWSGIKLTKLDKSTMKPT--GSLYSIAARPNN---------GGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDKSGKSMLEGGGTILDSGNDQWKGPGGQDIVN---GNILVRHAYDANDNGIPKLLINDLNWS-SGWPSY
1GYH Chain:D ((2-303))------------------------------------AKQVDVHDPVMTREGDTWYLFSTG----PGITIYSSKDRVNWRYSDRAFATEPTWAKRVSPSFDGHLWAPDIYQHKGLFYLYYSVSAFGKNTSAIGVTVNKTLNPASPDYRWEDKGIVIESVPQRDLWNAIAPAIIADDHGQVWMSFGSFWGGLKLFKLNDDLTRPAEPQEWHSIAKLERSVLMDDSQAGSAQIEAPFILRKGDYYYLFASWGLCCRKGDSTYHLVVGRSKQVTGPYLDKTGRDMNQGGGSLLIKGNKRWVGLGHNSAYTWDGKDYLVLHAYEAADNYLQKLKILNLHWDGEGWPQ-


General information:
TITO was launched using:
RESULT:

Template: 1GYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1590 -3512 -2.21 -12.45
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain D : 0.76

3D Compatibility (PKB) : -2.21
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.578

(partial model without unconserved sides chains):
PDB file : Tito_1GYH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1GYH-query.scw
PDB file : Tito_Scwrl_1GYH.pdb: