Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAFVSMKELLEDAKREQYAIGQFNINGLQWTKAILQAAQKEQSPVIAAASDRLVDYLGGFKTIAAMVGALIEDMAITVPVVLHLDHGSSAERCRQAIDAGFSSVMIDGSHQPIDENIAMTKEVTDYAAKHGVSVEAEVGTVGGMEDGLVGGVRYADITECE--RIVKE-TNIDALAAALGSVHGKYQGE--PNLGFKEMEAISRMTDIPLVLHGASGIP---------------------QDQIKKAITLGHAKININTECMVAWTDETRRMFQENSDLYEPRGYLTPGIEAVEETVRSKMREFGSAGKAAKQQVG
1RVG Chain:D ((2-305))--LVTGLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKY--GGRALTLMAVELAKEA--RVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGSVGRA------


General information:
TITO was launched using:
RESULT:

Template: 1RVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1515 -80696 -53.26 -290.27
target 2D structure prediction score : 0.74
Monomeric hydrophicity matching model chain D : 0.81

3D Compatibility (PKB) : -53.26
2D Compatibility (Sec. Struct. Predict.) : 0.74
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.541

(partial model without unconserved sides chains):
PDB file : Tito_1RVG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RVG-query.scw
PDB file : Tito_Scwrl_1RVG.pdb: