Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT---GTGRGGPGYKFADEFHPELQFDKPY----LLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRP-TDPVVIESITIS
2RMC Chain:E ((22-166))
-----------------------GRIVIGLFGNVVPKTVENFVALATGEKGYG------------YKGSIFHRVIKDFMIQGGDFTARDGTG----GMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMT--VVHSIELQATDGHDRPLTDCTIVNS----
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49654 for 1013 contacts (-49.0/contact) +
2D Compatibility (PS) -14703 + (NN) -11370 + (LL) 1064
1D Compatibility (HY) -13200 + (ID) 3800
Total energy: -91663.0 ( -90.49 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: