Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTAAAADGTMTVTL---EDVLSNTDGQVIAVYRLRASRAGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
3G8Z Chain:A ((20-147))
---MNTIDIAKSYITAIQTGDHATLGSIISPDVIWHQPGNHQFSGTHRGMAVVGPMLGKMMEV-S-NGTFAISRADDYMASG-DWVAITLEFSGQANGVTLKQAGVDLLRIEDGKIVEVRLFSADQTQEDAFWG
General information:
TITO was launched using:
RESULT:
Template:
3G8Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71602 for 900 contacts (-79.6/contact) +
2D Compatibility (PS) -13306 + (NN) -2551 + (LL) 80
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -95379.0 ( -105.98 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_3G8Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G8Z-query.scw
PDB file :
Tito_Scwrl_3G8Z.pdb
: