Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSASGDDPWGSAPASGSFGGGDDEPPF
3VDY Chain:B ((8-103))
------VMLVGRLTKDPDLRYTSAGAAVAHVTLA-VNRSFKNASGEI---EADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR--------NVYVTEVLADTV----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58071 for 562 contacts (-103.3/contact) +
2D Compatibility (PS) -9635 + (NN) -3802 + (LL) -252
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -80510.0 ( -143.26 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_3VDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VDY-query.scw
PDB file :
Tito_Scwrl_3VDY.pdb
: