Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRRTGQRWRGTLPGRRPWTRPAPATCRRHLAFVELRHYFARVMSSAIGSVARWIVPLLGVAAVASIGVIADPVRVVRAPALILVDAANPLAGKPFYVDPASAAMVAA----RNANPPNAELTSVANTPQSYWLDQAFPPATVGGTVARYTGAAQ------AAGAMPVLTLYGIPHRDCGSYASGGFA-----TGTDYRGWIDAVASGLG---SSPATIIVEPDALAMAD-------CLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDAGHSRWLS--------AEAMAARLNDVGV-GRARGFSLNVSNFYTTD--------------EEIGYGEAISGL----TNGSHYVIDTSRNGAGPAPDAPLNWCNPSGRALGAPPTTATAGAHADAYLWIKRPGESDGTCG----------------RGEPQAGRFVSQYAIDLAHNAGQ |
| 3VOG Chain:A ((4-360)) | ------------------------------------------------------------------------------------PSTGNPFEGYDIYLSPYYAEEVEAAAAMIDDPVLKAKALKVKEIPTFIWFDVVRKT----PDLGRYLADATAIQQRTGRKQLVQIVVYDLPDRDCAAAASNGEFSLADGGMEKYKDYVDRLASEIRKYPDVRIVAVIEPDSLANMVTNMNVAKCRGA--EAAYKEGVIYALRQLS-ALGVYSYVDAGHAGWLGWNANLAPSARLFAQIYKDAGRSAFIRGLATNVSNYNALSATTRDPVTQGNDNYDELRFINALAPLLRNEGWDAKFIVDQGRSGVQNIRQEWGNWCNVYGAGFGMRPTLNTPSSAIDAIVWIKPGGEADGTSDTSAPRYDTHCGKSDSHKPAPEAGTWFQEYFVNLVKNANP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VOG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79216 for 2444 contacts (-32.4/contact) +
2D Compatibility (PS) -31233 + (NN) -18307 + (LL) 7328
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -141428.0 ( -57.87 by residue)
QMean score : 0.467
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