Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MLFAALRDMQWRKRRLVITII-STGLIFGMTLVLTGLANGFRVEARHTVDSMGVDVFVVRSGAAGPFLGSIPFPDVDLARVAAEPGVM----AAAPLGSVGTIMKEGTSTRNVTVFGAPEHGPGMPRVSEGRSPSKPDEVAASSTM--GRHLGDTVEVGARRLRVV------------GIVPNSTALAKIPNVFLTTEGLQKLAYNGQPNITSIGII-----GMPRQLPEGYQTFDRVGAVNDL-VRPLKVAVNSISIVAVLLWIVAVLIVGSVVYLSALERLRDFAVFKAIGTPTRSIMAGLALQALVIALLAAVVG--------------------------VVLAQVLAPLFPMIVAVPVG-------AYLALPVAAIVIGLFASVAGLKRVVTVDPAQAFGGP |
| 1G8L Chain:A ((7-409)) | LMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDVVSPLDVPGFD---NSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAELPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKLAIKPGKPFAFGKLSNS------WFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGNVEVGEWVEVEPFNALFG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1G8L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203646 for 2430 contacts (-83.8/contact) +
2D Compatibility (PS) -35915 + (NN) -7482 + (LL) 924
1D Compatibility (HY) -4800 + (ID) 2950
Total energy: -253869.0 ( -104.47 by residue)
QMean score : 0.179
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