Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEVVTAAPAPPVVRLPPAV-RGPKLFQGLAFV-VSRRRLLGRFVRRYGKAFTANILMYGRVVVVADPQLARQVFTSSPEELGNIQPN--LSRMFGSGSVFALDGDDHRRRRRLLAPPFHGKSM--KNYETIIEEETLRETANWPQ--GQAFATLPSMMHITLNAILRAIFGAGGSEL-DELRRLIPPWVTLGS----RLAALPKPKRDYGRLSP--WGRLAEWRRQYDTVIDKLIEAERADPNFADRTDVLALMLRSTYD----DGSIMSRKDIGDELLTLLAAGHETTAATLGWAFERLSRHPDVLAALVEEVDNG-------------GHELRQAAILEVQRARTVIDFAA-RRVNPPVYQLGEWVIPRGYSIIINIAQIHGDPDVFPQPDRFDPQRYIGSKP---SPFAWIPFGGGTRRCVGAAFANMEMDVVLRTVLRHFTLETTTAAGE---RSHGRGVAFTPKDGGRVVMRRR |
| 1R9O Chain:A ((9-473)) | ------------RGKLPPGPTPLP-----LQIGIKDISKSLTNLSKVYGPVFTLYFGL-KPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWI------P-IIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTC-DIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPP-FYQLCFIPI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195012 for 3335 contacts (-58.5/contact) +
2D Compatibility (PS) -45450 + (NN) -23436 + (LL) 1020
1D Compatibility (HY) -24000 + (ID) 4250
Total energy: -291128.0 ( -87.29 by residue)
QMean score : 0.552
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