Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPFDDPQAELAWMFLQSLCEGGDLDEGFALLSNDFTYWSIVTRTELDKKTFRRAVERRKQVF-EVNIELIRCVNEGETVVVEGHCDGVS-ADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATPGRC
1NWW Chain:A ((19-148))
--AASTPDEKIVLEFMDALTS-NDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFTVMSIDAVETFHIGSSNGLVYTERVDVLRALPTGKSYNLSILGVFQLTEGKITGWRDYFDLREFEEAVDLPLR-----
General information:
TITO was launched using:
RESULT:
Template:
1NWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70235 for 942 contacts (-74.6/contact) +
2D Compatibility (PS) -13924 + (NN) -5668 + (LL) -16
1D Compatibility (HY) -6000 + (ID) 900
Total energy: -96743.0 ( -102.70 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1NWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWW-query.scw
PDB file :
Tito_Scwrl_1NWW.pdb
: