Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAKAIDYRTRLSDFMTEHVFGAEADYDDYRRAAGPADHTAPPIIEELKTKAKDRGLWNLFLSAESGLTNLEYAPLAE-MTGWSMEIAPEALNC--AAPDTGNMEILHMFGTEQQRAQWLRPLLDGKIRSAFSMTEPAVASSDARNIETTISRDGADYVINGRKWWTSGAADPRCKILIVMGRTNPDAAAHQQQSMVLVPIDTPGVTIVRSTPVFGWQDRHGHCEIDYHNVRVPATNLLGEEGSGFAIAQARLGPGRIHHCMRALGAAERALALMVNRVRNRVAFGRPLAEQGVVQQAIAQSRNEIDQARLLCEKAAWTIDQHGNKEARHLVAMIKAVAPRVACDVIDRAIQVHGAAGVSDDTPLARLYGWHRAMRIFDGPDEVHLRSIARAELSREKSTFAAAVT |
| 1UKW Chain:B ((19-374)) | --------------FAKEVILPVAQEYDE-------KEEVPWPVIEKLH----EVGLLNAIIPEEYGGMGLKM--LDEVIVGEELAYACMGIYTIPMASDLGITPVL-LAGTEEQKERFLRPLTEKPALAAFALSEPG-NGSDAAALKTRAIRQGDHYVLNGTKMWISNGGE--AEWVVVFATVNPELR-HKGVVALVVERGTPGFKAIKIHGKMG-QRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQ-GLPHA-HASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIAR--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UKW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149799 for 3187 contacts (-47.0/contact) +
2D Compatibility (PS) -38474 + (NN) -20853 + (LL) 3808
1D Compatibility (HY) -17200 + (ID) 5850
Total energy: -228368.0 ( -71.66 by residue)
QMean score : 0.434
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