Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS
3IVP Chain:A ((7-63))
-----------------------------------------------------------------------------------------------KYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSL---------------
General information:
TITO was launched using:
RESULT:
Template:
3IVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27753 for 368 contacts (-75.4/contact) +
2D Compatibility (PS) -6377 + (NN) -4596 + (LL) 8004
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -33972.0 ( -92.32 by residue)
QMean score : 0.740
(partial model without unconserved sides chains):
PDB file :
Tito_3IVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IVP-query.scw
PDB file :
Tito_Scwrl_3IVP.pdb
: