Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRHWPLFDLRITTPRLQLQLPTEELCDQLIDTILEGVHDPDRMPFSVPWTRASREDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAREGAMAEALLFRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEPPRY
2VZY Chain:D ((2-211))
-SRHWPLFDLRITTPRLQLQLPTEELCDQLIDTILE-------------------EDLPFNTLSHLWQQLAGFKRDDWSLPLAVLVDGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAREGAMAEALLFRLTRDDWQRHRTVEVRVDGFDRCRPLFG-------
General information:
TITO was launched using:
RESULT:
Template:
2VZY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110398 for 1447 contacts (-76.3/contact) +
2D Compatibility (PS) -20318 + (NN) -6287 + (LL) 880
1D Compatibility (HY) -26400 + (ID) 9550
Total energy: -172073.0 ( -118.92 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_2VZY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZY-query.scw
PDB file :
Tito_Scwrl_2VZY.pdb
: