Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTHR
3Q0J Chain:D ((3-257))
-TYETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFTH-
General information:
TITO was launched using:
RESULT:
Template:
3Q0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124954 for 2060 contacts (-60.7/contact) +
2D Compatibility (PS) -27503 + (NN) -8957 + (LL) 308
1D Compatibility (HY) -30400 + (ID) 12750
Total energy: -204256.0 ( -99.15 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_3Q0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q0J-query.scw
PDB file :
Tito_Scwrl_3Q0J.pdb
: