Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDH-----AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGV-------PYTDAL-------PEMPEPAIEVEP-PVCD---CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
4F56 Chain:B ((24-272))
--IVIISGAGVSAESGVPTFRG-AGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL--------
General information:
TITO was launched using:
RESULT:
Template:
4F56.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125926 for 1842 contacts (-68.4/contact) +
2D Compatibility (PS) -24759 + (NN) -15702 + (LL) 1032
1D Compatibility (HY) -18800 + (ID) 4900
Total energy: -189055.0 ( -102.64 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4F56.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F56-query.scw
PDB file :
Tito_Scwrl_4F56.pdb
: