Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMPDYHALIVGAGFSGIGAAIKLDRAGFSDYLVVEAGDGVGGTWHWNTYPGIAVDIPSFSYQF----SFEQSRHWSRTYAPGHELKAYAEHCVDKYGIRSRIRLNTKVLAAEFDDEHSLWRVQTDPGGEITARFLISACGILTVPKLPDIDGVDSFEGVTMHTARWDHTQ-------DLTGKRVGIIGTGASAVQVIPEMAPIVSHLTVFQRTPIWCFPKFDVPL------------PTAVRWAM---------RIP-GGKAVHRLLSQAFVEATF--PIAAHYFAVF-PLAKHMESAG------RRYLRQQVHDPVVREQLTPR-YAVGCKRPGFHNTYLSTFNRDNVRLV---TEPIDKITPTAVATTDGASHEIDVLVLATGFKVLDTDSIPTYAVTGTGGASLSRFWDEHRLQAYEGVSVPGYPNFFTVFGPYGYVGSSYFALIET---QAHHIIRCLKRARRTGATRIEVTEEANARYFAEVMRRRHRQVFWQDSCRLANSYYFDKNGDVPLRPTTTVEAYWRSRRFDLGDYRISS |
3UOX Chain:B ((8-486)) | --PALDAVVIGAGVTGIYQAFLINQAGMK-VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSA---PDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEGIKTAD-AAYDLDVIIYATGF-----GSLDRIDIRGKDNVRLIDAWAEGP-STYLGLQARGFPNFFTLVGPHN--GSTFCNVGVCGGLQAEWVLRMISYMKDNGFTYSEPTQAAENRWTEEV------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UOX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -299836 for 3417 contacts (-87.7/contact) +
2D Compatibility (PS) -45748 + (NN) -16713 + (LL) 4376
1D Compatibility (HY) -31200 + (ID) 8450
Total energy: -397571.0 ( -116.35 by residue)
QMean score : 0.523
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