Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMP---LILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
4X9S Chain:A ((6-244))
---VNKLELLPAVDVRDGQAVRLVHGVSGSETSYGSPLEAALAWQASGAEWLHLVDLDAAFGTGDNRALVAEITGAMDIKVELSGGIRDDASLAAALATGCTRVNLGTAALETPEWAAKAIAEHGDRIAVGLDVR----GTTLKGRGWTSEGGDLYETLARLDSEGCARYVVTDIGKDGTLTGPNLELLKNVCAATDRPVVASGGISSLEDLRALAALVPQGVEGAIVGKALYAKAFTLEEALKVV--
General information:
TITO was launched using:
RESULT:
Template:
4X9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164330 for 2085 contacts (-78.8/contact) +
2D Compatibility (PS) -26007 + (NN) -12984 + (LL) 460
1D Compatibility (HY) -25600 + (ID) 8050
Total energy: -236511.0 ( -113.43 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_4X9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X9S-query.scw
PDB file :
Tito_Scwrl_4X9S.pdb
: