Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
5AHW Chain:C ((2-147))
-SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPQSEDSRAADVLKDEGYKMAGNAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS
General information:
TITO was launched using:
RESULT:
Template:
5AHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67006 for 1208 contacts (-55.5/contact) +
2D Compatibility (PS) -16029 + (NN) -5423 + (LL) 208
1D Compatibility (HY) -16400 + (ID) 5700
Total energy: -110350.0 ( -91.35 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_5AHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHW-query.scw
PDB file :
Tito_Scwrl_5AHW.pdb
: