Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVKRAVNAHKKRRSILKASRGYRGQRSRLYRKAKEQQLHSLNYAYRDRRARKGEFRKLWIARINAAARLNDITYNRLIQGLKAAGVEVDRKNLADIAISDPAAFTALVDVARAALPEDVNAPSGEAA
5DM6 Chain:N ((2-117))
-PRAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR------------
General information:
TITO was launched using:
RESULT:
Template:
5DM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25782 for 710 contacts (-36.3/contact) +
2D Compatibility (PS) -12772 + (NN) -6434 + (LL) 404
1D Compatibility (HY) -8000 + (ID) 2650
Total energy: -55234.0 ( -77.79 by residue)
QMean score : 0.732
(partial model without unconserved sides chains):
PDB file :
Tito_5DM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM6-query.scw
PDB file :
Tito_Scwrl_5DM6.pdb
: