Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
1Q4T Chain:B ((16-148))
--PDVASHYPVAYEQTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLATEATVAVV--HEKGMMAVGQSNHTSFFRPVKEGHVRAEAVRIHAGSTTWFWDVSLRDDAGRLCA---VSSMSIAVRP
General information:
TITO was launched using:
RESULT:
Template:
1Q4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79342 for 1004 contacts (-79.0/contact) +
2D Compatibility (PS) -13831 + (NN) -7285 + (LL) 268
1D Compatibility (HY) -8400 + (ID) 2300
Total energy: -110890.0 ( -110.45 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_1Q4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q4T-query.scw
PDB file :
Tito_Scwrl_1Q4T.pdb
: