Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASSTTFVIVGGGLAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFLAGKKSLSDFTIQTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGSAPRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDVTVVETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITAADGKATGLKMRDGSTVAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRTEHWANALKQPAVAAAGMLGRPGE--YAELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVA--GREFLSFWLDGDSRVLAGMNVNVWDVVDDVKGLIRSGNPVDVDRLVDPQWPLADLTTN |
2YVJ Chain:P ((11-402)) | -------VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAH----GDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV--TGSVDGV---VLLDDGTRIAADMVVVGIGVLANDALARAAGLAC-DDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQ-GIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLA-SGDEEIVRGEVSLDAPKFTLIELQ-KGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255986 for 3363 contacts (-76.1/contact) +
2D Compatibility (PS) -41894 + (NN) -21732 + (LL) 440
1D Compatibility (HY) -24800 + (ID) 7750
Total energy: -351722.0 ( -104.59 by residue)
QMean score : 0.493
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