Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATTLPVQRHPRSLFPEFSELFAAFPSFAG--LRPTFDTRLMRLEDEMKEGRYEVRAELPGVDPDKDVDIMVRDGQLTIKAERTEQKDF----DG--RSEFAYGSFVRTVSLPVGADEDDIKATYDKGILTVSVAVSEGKPTEKHIQIRSTN
3W1Z Chain:A ((10-143))
--------------PPTVNDLFSDFVSYSPRLNNQIPGELSPSIDVHEGKDTVSVDVELPGVK-KEDVQVHYDSGKLTISGEVVNERKNESTEGNQRWSERRFGSFSRTITIPAKIDADRIEANFSNGLLTVTLPKVEKSQTKKQIAIK---
General information:
TITO was launched using:
RESULT:
Template:
3W1Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42557 for 733 contacts (-58.1/contact) +
2D Compatibility (PS) -13762 + (NN) -7020 + (LL) 860
1D Compatibility (HY) -6000 + (ID) 1950
Total energy: -70429.0 ( -96.08 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3W1Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W1Z-query.scw
PDB file :
Tito_Scwrl_3W1Z.pdb
: