Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRPRTDAIHHHVVVNAPIERAFAVFTTR--FGDFKPREHNLLAIPITETVFECHAGGHIYDRGV--DGS-VCKWARVLVYEPPSRVLFTWDIGPTWRPETDLAKTSEVEVRFTAQSAETTRVDLEHRHLDRHGPGWESVADGVDSEAGWPLYLRRYTDLLCIQVQP
3RD6 Chain:A ((6-149))
----IHSTFTIERTYPQSPDRVFHAFADKATVRRWRVDGDG------AEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQRIVFSYRMAIGP----QPMSASLTTVELTPSG-DGTRLTYTEQGAFFDGV---DSAKGR--EEGTRGLLEALAAEL------
General information:
TITO was launched using:
RESULT:
Template:
3RD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41027 for 936 contacts (-43.8/contact) +
2D Compatibility (PS) -14748 + (NN) -4386 + (LL) 1780
1D Compatibility (HY) -2000 + (ID) 1300
Total energy: -61681.0 ( -65.90 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_3RD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RD6-query.scw
PDB file :
Tito_Scwrl_3RD6.pdb
: