Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRL-ADLIGDGA--VALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
5EQC Chain:B ((254-432))
LIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVVPISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSF-----
General information:
TITO was launched using:
RESULT:
Template:
5EQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107794 for 1204 contacts (-89.5/contact) +
2D Compatibility (PS) -18745 + (NN) -5744 + (LL) 204
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -148429.0 ( -123.28 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_5EQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EQC-query.scw
PDB file :
Tito_Scwrl_5EQC.pdb
: