Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEGPKKAGVLGSPIAHSRSPQLHLAAYRALGLHDWTYERIECGAAELPVVVGGFGPEWVGVSVTMPGKFAALRFADERTARADLVGSANTLVRTPHGWRADNTDIDGVAGALGAAAGHALVLGSGGTAPAAVVGLAELGVTDITVVARNSDKAARLVDLGTRVGVATRFCAFDSGGLADAVAAAEVLVSTIPAEVAAGYAGTLAAIPVLLDAIYDPWPTPLAAAVGSAGGRVISGLQMLLHQAFAQVEQFTGLPAPREAMTCALAALD
4P4L Chain:B ((5-268))
----PKKAGVLGSPIAHSRSPQLHLAAYRALGLHDWTYERIECGAAELPVVVGGFGPEWVGVSVTMPGKFAALRFADERTARADLVGSANTLVRTPHGWRADNTDIDGVAGALG-AAGHALVLGSGGTAPAAVVGLAELGVTDITVVARNSDKAARLVDLGTRVGVATRFCAFD------AVAAAEVLVSTIPAEVAAGYAGTLAAIPVLLDAIYDPWPTPLAAAVGSAGGRVISGLQMLLHQAFAQVEQFTGLPAPREAMTCALAAL-
General information:
TITO was launched using:
RESULT:
Template:
4P4L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -220019 for 2324 contacts (-94.7/contact) +
2D Compatibility (PS) -28003 + (NN) -15167 + (LL) 52
1D Compatibility (HY) -33200 + (ID) 12850
Total energy: -309187.0 ( -133.04 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4P4L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P4L-query.scw
PDB file :
Tito_Scwrl_4P4L.pdb
: