Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
1SM8 Chain:C ((22-150))
-STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSF------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86039 for 863 contacts (-99.7/contact) +
2D Compatibility (PS) -14195 + (NN) -6737 + (LL) -160
1D Compatibility (HY) -18800 + (ID) 6450
Total energy: -132381.0 ( -153.40 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_1SM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM8-query.scw
PDB file :
Tito_Scwrl_1SM8.pdb
: