Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPPG----VNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQ----LPM--QVSSAADAARLAVRMENDGATAWRAVVEHA---ETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
1N1Q Chain:A ((6-134))
------------------QQLVAVLLNRQVANWVVLYVKLHNFHWNVNGPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIE----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41734 for 819 contacts (-51.0/contact) +
2D Compatibility (PS) -12682 + (NN) -9640 + (LL) 2032
1D Compatibility (HY) 2000 + (ID) 550
Total energy: -60574.0 ( -73.96 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_1N1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1Q-query.scw
PDB file :
Tito_Scwrl_1N1Q.pdb
: