Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEAGGAAADELSG-LFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRM-VHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
4NBU Chain:D ((10-248))
------RLQDKVAIITGAANGIGLEAARVFMKEGAKVVIADFNEAAGKEAVEANPGVVFIRVDVSDRESVHRLVENVAERFGKIDILINNAGIT--RDSMLSKMTVDQFQQVINVNLTGVFHCTQAVLPYMAEQGKGKIINTSSVTGTYGN-VGQTNYAAAKAGVIGMTKTWAKELARKGINVNAVAPGFTETAMVAEV----PEKVIEKMKAQVPMGRLGKPEDIANAYLFLASHESDYVNGHVLHVDGGI--------
General information:
TITO was launched using:
RESULT:
Template:
4NBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145644 for 2081 contacts (-70.0/contact) +
2D Compatibility (PS) -25969 + (NN) -11822 + (LL) 1192
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -206643.0 ( -99.30 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4NBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBU-query.scw
PDB file :
Tito_Scwrl_4NBU.pdb
: