Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAPPDVPS
1N5K Chain:B ((1-208))
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQR----ARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLA------
General information:
TITO was launched using:
RESULT:
Template:
1N5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115113 for 1703 contacts (-67.6/contact) +
2D Compatibility (PS) -22909 + (NN) -15925 + (LL) -620
1D Compatibility (HY) -24400 + (ID) 10200
Total energy: -189167.0 ( -111.08 by residue)
QMean score : 0.890
(partial model without unconserved sides chains):
PDB file :
Tito_1N5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N5K-query.scw
PDB file :
Tito_Scwrl_1N5K.pdb
: